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Import data from MSigDB
tmodImportMSigDB.Rd
Import data from an MSigDB file in either XML or GMT format
Usage
tmodImportMSigDB(
file = NULL,
format = "xml",
organism = "Homo sapiens",
fields = c("STANDARD_NAME", "CATEGORY_CODE", "SUB_CATEGORY_CODE", "EXACT_SOURCE",
"EXTERNAL_DETAILS_URL")
)
Arguments
- file
The name of the file to parse
- format
Format (either "xml" or "gmt")
- organism
Select the organism to use. Use "all" for all organisms in the file (only for "xml" format; default: "Homo sapiens")
- fields
Which fields to import to the MODULES data frame (only for "xml" format)