Return the contents of a gene set

Usage

getModuleMembers(x, mset = "all")

Arguments

x: a character vector of gene set names
mset: optional, a gene set collection

Value

A list of gene sets

Details

This function returns the selected gene sets from a collection.

Examples

# show the interferon related modules
getModuleMembers(c("LI.M127", "LI.M158.0", "LI.M158.0"))
#> $LI.M127
#>  [1] "TAP1"   "IFIH1"  "IRF7"   "PARP9"  "STAT1"  "PLSCR1" "IFITM1" "HERC5" 
#>  [9] "DDX60"  "USP18"  "RSAD2"  "IFIT1" 
#> 
#> $LI.M158.0
#>  [1] "LHCGR"    "COL8A1"   "IMPG2"    "ITGB4"    "MMP12"    "TNR"     
#>  [7] "IFNA7"    "IFNA4"    "SFN"      "LAMC2"    "ST14"     "ADAMTS20"
#> [13] "FGF5"     "IFNA10"   "IFNA16"   "IFNA14"  
#> 
#> $LI.M158.0
#>  [1] "LHCGR"    "COL8A1"   "IMPG2"    "ITGB4"    "MMP12"    "TNR"     
#>  [7] "IFNA7"    "IFNA4"    "SFN"      "LAMC2"    "ST14"     "ADAMTS20"
#> [13] "FGF5"     "IFNA10"   "IFNA16"   "IFNA14"  
#> 
getModuleMembers("LI.M127")
#> $LI.M127
#>  [1] "TAP1"   "IFIH1"  "IRF7"   "PARP9"  "STAT1"  "PLSCR1" "IFITM1" "HERC5" 
#>  [9] "DDX60"  "USP18"  "RSAD2"  "IFIT1" 
#>